Illumina amplicon sequencing of metagenomic paired-end library 'Solex... - SRA

SRX1058007: Illumina amplicon sequencing of metagenomic paired-end library 'Solexa-171924' containing sample 'SKSTL0015'
1 ILLUMINA (Illumina MiSeq) run: 219,807 spots, 76.9M bases, 48.6Mb downloads

UUID: e747c24c-7015-4935-9dd8-980dadaebd47

Design: Illumina sequencing of unclassified sequences via polymerase chain reaction

Submitted by: Broad Institute (BI)

Study: Microbiome study of the RISK cohort

PRJNA237362 • SRP040765 • All experiments • All runs

show Abstracthide Abstract

Risk Stratification and Identification of Immunogenetic and Microbial Markers of Rapid Disease Progression in Children with Crohn’s Disease.

Sample: Generic sample from unclassified sequences

SAMN03771667 • SRS960430 • All experiments • All runs

Organism: unclassified sequences

Library:

Name: Solexa-171924

Instrument: Illumina MiSeq

Strategy: AMPLICON

Source: METAGENOMIC

Selection: PCR

Layout: PAIRED

Spot descriptor:

1 forward176 reverse

Experiment attributes: (show all 13 attributes...) (hide...)

analysis_type: AssemblyWithoutReference

data_type: 16S

gssr_id: 356936.0

library_type: 16S

lsid: broadinstitute.org:bsp.prod.sample:4KJF1

material_type: DNA:DNA Genomic

product_order: PDO-1569

product_part_number: P-MCV-0002

project: G40576

research_project: RP-105

root_sample_id: SM-44748

sample_id: SM-4KJF1

work_request: 36965

Pipeline: show...hide...

Name	Step	Program	Version	Notes
base caller	2013-07-18 16:44:42.0	GAPipeline	RTA1.17.28	Sequencer Application 2.2.0

Runs: 1 run, 219,807 spots, 76.9M bases, 48.6Mb

Run	# of Spots	# of Bases	Size	Published
SRR2062024	219,807	76.9M	48.6Mb	2015-06-12

ID:: 1535016

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Sequence Read Archive

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